Hi Keith,
A SAMTools update is being discussed internally. I can't comment yet
about when exactly this would be implemented, but when the time comes
the details would be made public in the Galaxy Announcements and News Brief:
http://galaxyproject.org/wiki/News
There are also a few bitbucket tickets related to particular SAMTools
modules, with this one being specific for mpileup:
http://bitbucket.org/galaxy/galaxy-central/issue/524
Best,
Jen
Galaxy team
On 9/7/11 7:09 AM, Keith Funkhouser wrote:
Hi all,
It seems that the more recent "mpileup" tool that is a part of SAMtools
offer better indel prediction than the current "pileup" tool.
I've found the following thread
http://gmod.827538.n3.nabble.com/samtools-mpileup-update-td3277940.html
...and the following issue
https://bitbucket.org/galaxy/galaxy-central/issue/524/implement-wrappers-for-mpileup-and
...regarding the topic.
Is there community demand for this new tool implementation in Galaxy, or
is it already in the works?
Thanks,
Keith Funkhouser
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