Hello Arun,
In brief, you will want to load your data via FTP, groom the files, and
run BWA for Illumina with the paired-end data option (for mapping, not
assembly).
Help to get started can be found at:
http://galaxyproject.org/wiki/Learn
An initial input of 30G would likely not be a problem, but it depends on
what analysis steps you intend to do after mapping. A Cloudman option
may be more suitable, please see:
http://galaxyproject.org/wiki/Big%20Picture/Choices
Hopefully this helps,
Best,
Jen
Galaxy team
On 9/14/11 7:06 PM, Arun Khattri wrote:
I have 3 illumina paired end reads of exome capture of the sample. I
want to assemble these reads to genome using tools available in Galaxy
(BWA etc). My concern is the amount of data that I can analyzed and
when these reads should be merged. The total size of data is +30Gb.
Thanks,
Arun
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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