Hi, I'm trying to restart my Galaxy Cloudman service, using the same approach that has been successful over the last couple of months ..
- launch AMI 861460482541/galaxy-cloudman-2011-03-22 as m1.large
- update from Cloudman console
- copy in my tools etc etc
- restart
- away we go, all works
However today the update fails, the log says ...
/mnt/galaxyTools/galaxy-central/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1:
RuntimeWarning: __builtin__.file size changed, may indicate binary
incompatibility
from csamtools import *
python path is:
/mnt/galaxyTools/galaxy-central/eggs/numpy-1.6.0-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/boto-2.2.2-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/Whoosh-0.3.18-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/pycrypto-2.0.1-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/python_lzo-1.08_2.03_static-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/bx_python-0.7.1_7b95ff194725-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/amqplib-0.6.1-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/pexpect-2.4-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/Babel-0.9.4-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/Mako-0.4.1-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/WebHelpers-0.2-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/simplejson-2.1.1-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/wchartype-0.1-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/docutils-0.7-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/WebOb-0.8.5-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/Routes-1.12.3-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg,
/mnt/galaxyTools/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg,
/mnt/galaxyTools/galaxy-central/eggs/Paste-1.6-py2.6.egg,
/mnt/galaxyTools/galaxy-central/lib, /usr/lib/python2.6/,
/usr/lib/python2.6/plat-linux2, /usr/lib/python2.6/lib-tk,
/usr/lib/python2.6/lib-old, /usr/lib/python2.6/lib-dynload
Traceback (most recent call last):
File "/mnt/galaxyTools/galaxy-central/lib/galaxy/web/buildapp.py",
line 82, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/mnt/galaxyTools/galaxy-central/lib/galaxy/app.py", line 24, in __init__
self.config.check()
File "/mnt/galaxyTools/galaxy-central/lib/galaxy/config.py", line
243, in check
tree = parse_xml( config_filename )
File "/mnt/galaxyTools/galaxy-central/lib/galaxy/util/__init__.py",
line 105, in parse_xml
tree = ElementTree.parse(fname)
File
"/mnt/galaxyTools/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 859, in parse
tree.parse(source, parser)
File
"/mnt/galaxyTools/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 576, in parse
source = open(source, "rb")
IOError: [Errno 2] No such file or directory: './migrated_tools_conf.xml'
Removing PID file paster.pid
While I'm here, I see a new Galaxy Cloudman AMI
072133624695/galaxy-cloudman-2012-02-26.
I can't manage to start that, I get an error as below, with all types of
instance, (tiny/small/medium/large). Is that a recommended AMI now ? It
would be good to have a new updated AMI.
[image: Inline image 1]
Thanks !
--
Greg Edwards,
Port Jackson Bioinformatics
gedwar...@gmail.com
<<snap1.png>>
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