Hi Makis, here is my working nr entry:
/media/data/ncbi/blast/db/unpacked_nt/nt<tab>ncbi_nt<tab>/media/data/databases/ncbi/blast/db/unpacked_nt/nt i was not able to see if your tabs are correct. So maybe its just a wrongly formatted loc file. Cheers, Bjoern P.S. You can download preformatted blast-databases directly from http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/blastdb.html > Dear Galaxy users, > > I have been trying to upload a blastable database in my local instance > of galaxy. I have used the nr database and generated all the nhr, nin, > nsq, and nal files. I have also edited the blastdb.loc file in the > galaxy-dist/tool-data/ directory and it looks like this: > > database [build data] path > nr_01_Mar_2012 nr 15 Mar 2012 /home/user/Desktop/nr.00/nr > > > Nevertheless when i start galaxy the megablast tool can't recognise > the database. Am I missing something? > > Thank you in advance > Makis Ladoukakis > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ -- Björn Grüning Albert-Ludwigs-Universität Freiburg Institute of Pharmaceutical Sciences Pharmaceutical Bioinformatics Hermann-Herder-Strasse 9 D-79104 Freiburg i. Br. Tel.: +49 761 203-4872 Fax.: +49 761 203-97769 E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de Web: http://www.pharmaceutical-bioinformatics.org/
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
