Hong: I'm forwarding this to our official user mailing list. Please, use it in the future for your inquiries.
Thanks! anton Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Apr 3, 2012, at 4:37 PM, xu hong wrote: > Hi Anton, > > I'm a biological student using Galaxy sever to fetch sequences in > fasta format for our bioinformatics data analysis. First, I uploaded > our BED file(I think there is no significant difference from the GFF > format defined in Galaxy/UCSC), and then use "Fetch Sequences" > function in Galaxy Server. > However, I got the following error: > > "2: Extract Genomic DNA on data 1 > 0 bytes > An error occurred running this job: Traceback (most recent call last): > File "/galaxy/home/g2main/galaxy_main/tools/extract/extract_genomic_dna.py", > line 288, in <module> > f __name__ == "__main__": __main__() > File "/galaxy/home/g2main/galaxy_main/tools/extract/extract_genomic_dna.py" > " > > Could you help me configure out what's wrong with my analysis or could > you get the fasta file I want for me? > > Attached is the BED file(based on hg18) I uploaded to Galaxy server in psu. > > Thanks. > > Beg your reply. > > Best > Hong Xu > Zhejiang University,China > <IGGPart2.rar> ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
