Binnaz: Please, in the future forward such questions to galaxy-u...@bx.psu.edu mailing list. This is the most reliable way to get your queries answered.
If you carefully go through http://usegalaxy.org/galaxy101 you will see how to count occurrences of features (such as LINES) within genomic ranges (such as (ChrX:144,000,000-146,500,000)). Thanks! anton Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Apr 19, 2012, at 12:53 PM, Binnaz Yalcin wrote: > Dear Anton, > > Can I do an anrichment analysis in Galaxy? if so, how? > > I want to know whether a region on mouse chromosome X > (ChrX:144,000,000-146,500,000 bp) is enriched with LINE elements, compared to > the rest of the chromosome X. > > Any advice would be much more appreciated. > > Thanks > > Best, > Binnaz YALCIN > ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
