Hello,
It sounds as if you are using the Cistrome hosted Galaxy instance? If
so, it would be best to contact them directly to discuss the
tools/wrappers developed by their group. This is the primary web site:
http://cistrome.org. A help email is on the Cistrome Galaxy's login page.
Good luck with your project,
Jen
Galaxy team
On 5/18/12 12:58 AM, shamsher jagat wrote:
I have run a ChIPseq work flow in galaxy, At teh end I ran CEAS:
Enrichment on chromosome and annotation (version 1.0.0) to annotate the
peaks which gave me a pdf file shoiwng distribution of peaks across
genome with pie chart as well as well as histogram. It shows that ~5% of
my peaks in 5UTR regions and other 3 % in 3' UTR 63 % exon and so on. Is
there a way that I can have list of genes/ refrence ids which arein
5'UTR /3'UTR. I tried all tools in Galaxy but could not find it. There
should be some way to extract these summarized results in details. Any
one has a suggestion please?
Thanks
Kanwar
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
