I have been trying to use either Unified genotyper or Freebayes on one of the
Bam file. Both are failing.
1. With Unified genotyper it give me message saying Sequences are not currently
available for specified build. I have hg19 related data and using default
settings (pick up hg_g1k_v37 no other option). I am not sure why it is giving
me this error.
2. As an alternative I tried to run Freebayes with default setting and choosing
hg19 - it i snot giving any specific message but undetr bug icon gives me
-killed.
Now in order to make sure my Bam is OK, I tested out side Galaxy mPile up and
with in Galaxy pile up. Any suggestion why UNified genotyper is not working. If
needed I can share my history.
Thanks.
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