Hello Irene,
This wiki has the formatting details, including a screencast for genome
prep, and many tips for correcting format problems that use Galaxy's
tools whenever possible:
http://wiki.g2.bx.psu.edu/Learn/CustomGenomes#Screencasts_.26_Tutorials
watch "Custom Genome Prep"
http://wiki.g2.bx.psu.edu/Learn/CustomGenomes#Troubleshooting
That said, it many simply be that the "datatype" is not actually set to
be "fasta" for the dataset? Do this by clicking on the pencil icon to
reach the "Edit Attributes" form, set this manually, and save.
Hopefully this helps,
Jen
Galaxy team
On 8/10/12 3:39 AM, i b wrote:
Dear all,
I managed to upload to Galaxy a genome of interest in .fasta format
from NCIB website.
However, Galaxy does not recognize it as input to run Tophat...
Wht format has to be to be used as referece genome for tophat?and how
can i convert it?
Any suggestion?
thanks,
ib
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Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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