Hi all,
We have recieved some bam files that were aligned to hg18. What would be
the easiest workflow to get a VCF file from GATK in build hg19 ? We are
running a local galaxy with only hg19 for the moment. Lifting the bam
file would be my first choice, providing support to hg18 by generating
all indices would be my last :-)
Best regards,
Geert
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