Hi Toni, to convert a bed file to a fasta file you need the genomic sequence. You can specify a genome-build for every bed file in your history. You probably don't have a genome build specified or its specified as sacCer2. sacCer2 is not configured I would guess, so no genome is available. Try to install a genome for your organism and set the bed file to this genome-build.
Cheers, Bjoern > Hello, > > I'm trying to convert a .bed file to a FASTA file. I get the following > error when I do. > > "An error occurred with this dataset: No sequences are available for > 'sacCer2', request them by reporting this error." > > > I'm not sure what the issue is? > > Thanks, > Toni > > -- > Toni Marie Delorey > Regev Lab, 6175-OO > The Broad Institute of MIT and Harvard > 7 Cambridge Center > Cambridge, MA 02141 > Email: delo...@broadinstitute.org > Phone: 617-714-8225 > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
