Lilach: This tool works on unaligned reads in fastq format before they are mapped. It is useful for merging mates together into a single read for QC processing, filtering, and trimming.
Thanks! anton On Wed, Sep 11, 2013 at 4:34 AM, lilach noy <lilach...@gmail.com> wrote: > Hi all, > > Has anyone used FASTQ joiner with a file containing multi-mapped reads? > I'm pretty sure i have reads mapped to several locations and i don't know > what this tool does with it? will it locate the right map according to the > paired read? will it use the first read location and ignore the rest or > maybe it will exclude all multi-mapped reads prior to paring? > > Regards, > Lilach > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
