Hi,
just download the IGV binary distribution from the Broad's website, unpack and start the appropriate file (it depends on your OS, explained in the readme). Then. in Galaxy, open the BAM file by clicking on "display with IGV LOCAL". Each BAM file will be loaded into the same window of IGV. Alternatively, download the BAMs, open the IGV and load files locally from your PC. Best, Sebastian ----------------------------------------------- Helmholtz Zentrum München LMU München mail: [email protected] [email protected] ________________________________________ From: [email protected] [[email protected]] On Behalf Of Ben Gift [[email protected]] Sent: Wednesday, September 25, 2013 11:02 PM To: [email protected] Subject: [galaxy-user] Trying to visualize 2 bam files from Galaxy I'm trying to start a visualizer with two different files to show a person where the variants are. Can I start IGV or something like it with multiple files? I read the docs and didn't find anything about it. I also asked here http://www.biostars.org/p/82032/ Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Ingolstädter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir´in Bärbel Brumme-Bothe Geschäftsführer: Prof. Dr. Günther Wess Dr. Nikolaus Blum Dr. Alfons Enhsen Registergericht: Amtsgericht München HRB 6466 USt-IdNr: DE 129521671 ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
