Revision: 19887
http://sourceforge.net/p/gate/code/19887
Author: ian_roberts
Date: 2016-12-21 00:18:21 +0000 (Wed, 21 Dec 2016)
Log Message:
-----------
Removed normagene
Modified Paths:
--------------
userguide/trunk/domain-creole.tex
userguide/trunk/recent-changes.tex
Modified: userguide/trunk/domain-creole.tex
===================================================================
--- userguide/trunk/domain-creole.tex 2016-12-21 00:16:01 UTC (rev 19886)
+++ userguide/trunk/domain-creole.tex 2016-12-21 00:18:21 UTC (rev 19887)
@@ -314,17 +314,17 @@
\end{itemize}
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\subsect[sec:domain-creole:biomed:normagene]{NormaGene}
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\htlink{http://pingu.unige.ch:8080/NormaGene/}{NormaGene} is a web service,
provided by the
-\htlink{http://eagl.unige.ch/BiTeM/}{BiTeM group} in Geneva. The service
provides tools for both
-gene tagging and normalization, although currently only tagging is supported
by this GATE wrapper.
-
-The NormaGene Tagger PR is configured via two runtime parameters as follows:
-\begin{itemize}
-\item \textbf{annotationSetName} the name of the annotation set in which the
Gene annotations should be created.
-\item \textbf{threshold} the threshold at which an entity will be considered a
gene (defaults to 0.6). Minimize
-the threshold parameter with short text input to receive better results.
Tuning the threshold down helps to find
-more complex gene names in the text but it also increases the time taken to
process the text.
-\end{itemize}
+% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% \subsect[sec:domain-creole:biomed:normagene]{NormaGene}
+% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% \htlink{http://pingu.unige.ch:8080/NormaGene/}{NormaGene} is a web service,
provided by the
+% \htlink{http://eagl.unige.ch/BiTeM/}{BiTeM group} in Geneva. The service
provides tools for both
+% gene tagging and normalization, although currently only tagging is supported
by this GATE wrapper.
+%
+% The NormaGene Tagger PR is configured via two runtime parameters as follows:
+% \begin{itemize}
+% \item \textbf{annotationSetName} the name of the annotation set in which the
Gene annotations should be created.
+% \item \textbf{threshold} the threshold at which an entity will be considered
a gene (defaults to 0.6). Minimize
+% the threshold parameter with short text input to receive better results.
Tuning the threshold down helps to find
+% more complex gene names in the text but it also increases the time taken to
process the text.
+% \end{itemize}
Modified: userguide/trunk/recent-changes.tex
===================================================================
--- userguide/trunk/recent-changes.tex 2016-12-21 00:16:01 UTC (rev 19886)
+++ userguide/trunk/recent-changes.tex 2016-12-21 00:18:21 UTC (rev 19887)
@@ -46,7 +46,8 @@
\item Fixed a long-standing bug in the regex sentence splitter for documents
with long sequences of blank lines.
\item Removed Minipar parser plugin as the data files on which it depends are
- no longer available for download.
+ no longer available for download, and the \verb!Tagger_NormaGene! plugin as
+ the service it relies on is no longer online.
\end{itemize}
Plus the usual suite of miscellaneous smaller bug fixes.
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