http://gcc.gnu.org/bugzilla/show_bug.cgi?id=49277
Richard Guenther <rguenth at gcc dot gnu.org> changed: What |Removed |Added ---------------------------------------------------------------------------- Status|ASSIGNED |WAITING --- Comment #3 from Richard Guenther <rguenth at gcc dot gnu.org> 2011-06-06 15:23:47 UTC --- Works for me. /abuild/rguenther/install/usr/local/bin/gcc -m32 -msse2 -mfpmath=sse -O2 -ffast-math -fwhole-program -fuse-linker-plugin -Wl,-rpath=/abuild/rguenther/install/usr/local/lib -flto=6 alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o hmmcalibrate.o hmmsearch.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o tophits.o trace.o ucbqsort.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o translate.o types.o vectorops.o weight.o -lm -o hmmer /usr/bin/ld: Warning: alignment 4 of symbol `Alphabet' in /tmp/ccb1HVsX.ltrans17.ltrans.o is smaller than 16 in hmmsearch.o.ironly specmake -j6 options 2> options.err | tee options.out ... Please provide a testcase.