Hello Niel, This error causes concern for us -- sorry you had to encounter it. If your data is not proprietary (or behind a firewall), would you consider giving me access to it (no need to cc the whole list)? Jim Kent and I would then use your data to help troubleshoot the problem with the program.
Regards, ---------- Ann Zweig UCSC Genome Bioinformatics Group http://genome.ucsc.edu ----- [email protected] wrote: > Hi, > > Yes, I was referring to the linux x86_64 (as far as I can see, that's > the > only the only program available for bed graph to big wig?) > > Now I'm getting a new error: > > bedGraphToBigWig: bbiWrite.c:346: bbiOutputOneSummaryFurtherReduce: > Assertion `bounds < boundsEnd' failed. > Aborted > > I really don't think my bedGraph file has positions out of bounds, but > I > ran it with -clip just in case, and got the same error. > > Niel > > > > > > Hi Niel, > > > > We have also released a cleanly built copy of the linux x86_64 > > bedGraphToBigWig download, in case that is what you were referring > to: > > > > > http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig > > > > Angie > > > > > > ----- "Jennifer Jackson" <[email protected]> wrote: > > > >> From: "Jennifer Jackson" <[email protected]> > >> To: [email protected] > >> Cc: [email protected] > >> Sent: Friday, September 4, 2009 5:17:17 PM GMT -08:00 US/Canada > Pacific > >> Subject: Re: [Genome] bedGraphToBigWig > >> > >> Hello Niel, > >> > >> Thank you for letting us know about this. Try a fresh build and > things > >> should work. Plus, here are some new help instructions: > >> > >> http://genomewiki.ucsc.edu/index.php/Build_Environment_Variables > >> > >> Please let us know if you continue to have problems, > >> Thank you, > >> Jennifer > >> > >> ------------------------------------------------ > >> Jennifer Jackson > >> UCSC Genome Bioinformatics Group > >> > >> ----- [email protected] wrote: > >> > >> > From: [email protected] > >> > To: [email protected] > >> > Sent: Friday, September 4, 2009 12:12:27 PM GMT -08:00 US/Canada > >> Pacific > >> > Subject: [Genome] bedGraphToBigWig > >> > > >> > Hi, > >> > > >> > I'm trying to create a bigWig file out of a bedGraph file. when > I > >> use > >> > the > >> > bedGraphToBigWig utility, I get the error: > >> > > >> > error while loading shared libraries: libssl.so.6: cannot open > >> shared > >> > object file: No such file or directory > >> > > >> > > >> > I've used bedToBigBed, and get no errors. > >> > > >> > Any help would be appreciated. > >> > > >> > Niel > >> > > >> > > >> > > >> > _______________________________________________ > >> > Genome maillist - [email protected] > >> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > >> _______________________________________________ > >> Genome maillist - [email protected] > >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
