Hello, The June 2008 (Saccharomyces cerevisiae) genome assembly sacCer2 is based on sequence dated June 2008 in the Saccharomyces Genome Database (SGD). Please see the Genome browser assembly gateway page for more information in the credits section.
Genome sequence and associated annotations are in the directory called "Full data set" http://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/bigZips/ Genome sequences, one file per chromosome are in the directory called "Data set by chromosome" http://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/chromosomes/ Fasta files for each database used for annotation can also be extracted using the Table browser http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#Sequence Some more help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Download Thank you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Paul Rigor (uci)" <paul.ri...@uci.edu> wrote: > From: "Paul Rigor (uci)" <paul.ri...@uci.edu> > To: gen...@soe.ucsc.edu > Sent: Thursday, September 24, 2009 3:07:30 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] genomes for the sacCer2 alignment > > Hi, > > For the sacCer2 alignment ( > http://hgdownload.cse.ucsc.edu/downloads.html#yeast) where would I > obtain > the fasta files for the individual genomes your group used to build > the > alignment? > > Thanks, > Paul > > -- > Paul Rigor > Graduate Student > Institute for Genomics and Bioinformatics > Donald Bren School of Information and Computer Sciences > University of California, Irvine > http://www.paulrigor.net/ > http://www.ics.uci.edu/~prigor > _______________________________________________ > Genome maillist - Genome@lists.soe.ucsc.edu > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - Genome@lists.soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
