Hello, Do you want to load the data as a Custom track at UCSC (perhaps saved in a Session)? Or do you want to load the data into your own mirror database?
If a Custom track at UCSC is your goal, follow these instructions (below) and submit using the Custom track page. Consider using a Session to save data for longer than 48hrs on the server. The wiki link that you used is a great place to learn about formatting and should be followed. http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Sessions Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Rathi Thiagarajan" <r.thiagara...@imb.uq.edu.au> wrote: > From: "Rathi Thiagarajan" <r.thiagara...@imb.uq.edu.au> > To: gen...@soe.ucsc.edu > Sent: Thursday, October 1, 2009 12:19:10 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Microarray track advice > > Hi there, > > I am very interested in representing the Mouse Embryonic Kidney > Subcompartment Microarray Atlas (Affymetrix M430.2, over 50 .CEL > files) > published in Dev. Cell in 2008 by Eric Brunskill et. al as a > microarray > track (i.e. GNF Atlas /Affy Exon track), but don't know where to > start. > > I have referred to the Microarray track Wiki page but still not sure > about > several key aspects: > 1) do I have to physically load the .CEL files in > microarrayGroups.ra? > 2) What numbers are represented in the expScores? Can I use any > numbers > here (i.e. Fold Change) for the representation of the heatmap scale? > 3) Am I required to provide the Mean and Median? > 4) how do I get access to microarrayGroups.ra > (kent/src/hg/makeDb/hgCgiData)? Do I need to a UCSC mirror > adminstrator? > > > Thanking you in advance for you advice, patience and feedback. > > Cheers, > Rathi > > _______________________________________________ > Genome maillist - Genome@lists.soe.ucsc.edu > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - Genome@lists.soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
