I need some advice concerning your genome browser and I hope you can help me get the relevant information.
Trying out some theoretical model concerning inverted repeats, that has been developed using your assemblies (hg18 and hg19), we wish to see whether indvidual genomic sequences (e.g. venter and watson), abide by it. Using your browser I can observe the snps found on these Genome Variants but I am left with some questions that bother me: 1. are the snps recorded in the 'Genome Variants' lines all the snps that were reported in the genomes of venter and watson? 2. were all genomic regions covered by these analyses? i.e., if I dont see any snp does it mean that there are none, or could it be that the particular region has not been analyzed? If the latter is the case, where do I find the information what has been covered by the variant analysis and what was not covered by it? 3. do you have a tool that can count the number of individual snps in a given range over some region of the chromosome? 4. where do I find the information of CNVs, inversions and deletions of larger sections than single snps in the individual Genome Variants? Your help will be much appreciated. Many thanks, David Horn http://horn.tau.ac.il _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
