Hi,
I want to convert a bedgraph file to the bigwig format. I downloaded the
fetchChromSizes and bedGraphToBigWig utility.
and tried the following commands:
./fetchChromSizes hg18 > hg18.chrom.sizes
./bedGraphToBigWig in.txt hg18.chrom.sizes out.bw
The bedGraphToBigWig program gives a Floating point exception
Any ideas/suggestions on what may be going wrong? The in.txt file is attached.
Thanks a lot for your help.
-Dhiral.
track type=bedGraph name="BedGraph Format" description="BedGraph format"
visibility=full color=200,100,0 altColor=0,100,200 priority=20
chr1 1 100 1
chr1 100 200 2
chr1 200 300 3
chr1 300 400 4
chr1 400 500 5
chr1 500 600 6
chr1 600 700 7
chr1 700 800 8
chr1 800 900 9
chr1 900 1000 10
chr1 1000 1100 11
chr1 1100 1200 12
chr1 1200 1300 13
chr1 1300 1400 14
chr1 1400 1500 15
chr1 1500 1600 16
chr1 1600 1700 17
chr1 1700 1800 18
chr1 1800 1900 19
chr1 1900 2000 20
chr1 2000 2100 21
chr1 2100 2200 22
chr1 2200 2300 23
chr1 2300 2400 24
chr1 2400 2500 25
chr1 2500 2600 26
chr1 2600 2700 27
chr1 2700 2800 28
chr1 2800 2900 29
chr1 2900 3000 30
chr1 3000 3100 31
chr1 3100 3200 32
chr1 3200 3300 33
chr1 3300 3400 34
chr1 3400 3500 35
chr1 3500 3600 36
chr1 3600 3700 37
chr1 3700 3800 38
chr1 3800 3900 39
chr1 3900 4000 40
chr1 4000 4100 41
chr1 4100 4200 42
chr1 4200 4300 43
chr1 4300 4400 44
chr1 4400 4500 45
chr1 4500 4600 46
chr1 4600 4700 47
chr1 4700 4800 48
chr1 4800 4900 49
chr1 4900 5000 50
chr1 5000 5100 51
chr1 5100 5200 52
chr1 5200 5300 53
chr1 5300 5400 54
chr1 5400 5500 55
chr1 5500 5600 56
chr1 5600 5700 57
chr1 5700 5800 58
chr1 5800 5900 59
chr1 5900 6000 60
chr1 6000 6100 61
chr1 6100 6200 62
chr1 6200 6300 63
chr1 6300 6400 64
chr1 6400 6500 65
chr1 6500 6600 66
chr1 6600 6700 67
chr1 6700 6800 68
chr1 6800 6900 69
chr1 6900 7000 70
chr1 7000 7100 71
chr1 7100 7200 72
chr1 7200 7300 73
chr1 7300 7400 74
chr1 7400 7500 75
chr1 7500 7600 76
chr1 7600 7700 77
chr1 7700 7800 78
chr1 7800 7900 79
chr1 7900 8000 80
chr1 8000 8100 81
chr1 8100 8200 82
chr1 8200 8300 83
chr1 8300 8400 84
chr1 8400 8500 85
chr1 8500 8600 86
chr2 8600 8700 87
chr3 8700 8800 88
chr4 8800 8900 89
chr5 8900 9000 90
chr6 9000 9100 91
chr7 9100 9200 92
chr8 9200 9300 93
chr9 9300 9400 94
chr10 9400 9500 95
chr11 9500 9600 96
chr12 9600 9700 97
chr13 9700 9800 98
chr14 9800 9900 99
chr15 9900 10000 100
chr16 9900 10000 100
chr17 9900 10000 100
chr18 9900 10000 100
chr19 9900 10000 100
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chr21 9900 10000 100
chr22 9900 10000 100
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