Hi Davide, 



> Well, I did that after reading this: 
> http://genome-test.cse.ucsc.edu/builds/versions-all/v218-preview.html 
> and this: 
> http://genomewiki.ucsc.edu/index.php/Build_Environment_Variables#USE_BAM 

Ah, I forgot about our QA team's nice summaries. And the exposure that wiki 
pages can get. Nice to know that there's so much interest in this. 



> I would like to load PE data (to see if the paired reads are somehow 
> connected with a line...) 
> but I wasn't able to load. 

The lines won't be displayed unless you include the setting pairEndsByName on 
the track line, e.g. "track type=bam pairEndsByName=. name=myPairTrack ...". If 
you are getting errors when you try to load a BAM file, please send me a test 
case! 

Thanks, 
Angie 





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