Hello, Create a simple BED file, upload as a custom track, then use the Table browser to extract genome sequence. The methods are covered in the Custom track and Table browser help.
http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks http://genome.ucsc.edu/FAQ/FAQformat#format1 This prior answer provides a similar answer, but may also be helpful: https://lists.soe.ucsc.edu/pipermail/genome/2006-February/009864.html Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- [email protected] wrote: > From: [email protected] > To: [email protected] > Sent: Thursday, November 12, 2009 3:56:55 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Consult > > Dear Srs. > I need extract sequences of human genome, lowercase masked. These > regions > (near 4000) are in coding and no coding sections of the genome. > Is there any option to make this extraction on line?, for example, > sending > chromosome numbers and range of the fragments to extract sequences. > Thank you very much. > Dr. Lucas Daurelio. > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
