Hi, I am trying to compute the Derived Allele Frequency of the SNPs from HapMap3. Is there an easier way to do it using the *Database:* hg18 *Primary Table:* hapmapAllelesChimp
I am having problems because the reference sequence for Human is on the positive strand. While the reference for Chimp is on the positive for positive strands and negative for strands with negative orientation. Why is that? Where is the build information for Chimp data. So what is the easiest and fastest way to compute the derived allele frequency using this table. Thank you, Vishal -- Vishal Rajesh Patel Graduate Student Universty of California, Irvine [email protected] http://www.biognosis.org _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
