G'day all,

I hope I am sending this to the right place.
I just came across a pretty serious shortcoming of the mafsInRegion  
script: apparently, the tool doesn't reverse-complement the alignments  
from bed file entries with (-) orientations.

Thanks for your consideration.

Martin A. Smith, M.Sc
==============
PhD candidate
Mattick Group
Institute for Molecular Bioscience
University of Queensland
Brisbane, Australia
Ph: +07 3346 2075
[email protected]




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