Dear friends, I have a short questions related to the mapping of CDSes for genBank transcripts onto the genome assembly (hg18 in this case).
I would be curious to know how exactly the position of CDS start and CDS end are mapped onto hg18 for the transcripts included in the "gbCdnaInfo" table. For example, BC051699 has transcript mapping info in "all_mrna" table, and is linked to CDS ID 105093 in the "gbCdnaInfo" table, which in turn indicates the CDS being "140..1471" in the "cds" table. I am not sure where to find the info on where the 140 and 1471 coordinates in the transcript are mapped onto the genome, so I would appreciate some help clarifying that. Thank you in advance, Valer -------------------------------- Valer Gotea Research Fellow CBB / NCBI / NLM / NIH http://www.ncbi.nlm.nih.gov/CBBresearch/Fellows/Gotea/ _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
