Dear Ms Jackson, > We do have some tracks for datasets with sufficient sample sizes to estimate > frequency within some populations: HGDP Alleles contains frequencies in 53 > populations worldwide, and HapMap SNPs includes allele counts (even better -- > you know the sample size in addition to freq) for 11 populations.
I think this the one I am looking for. Is there a way I can download the flat file for it? Please advice. Regards, G.V. > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > > ----- "Gundala Viswanath" <[email protected]> wrote: > >> From: "Gundala Viswanath" <[email protected]> >> To: [email protected] >> Sent: Wednesday, December 2, 2009 6:42:46 AM GMT -08:00 US/Canada Pacific >> Subject: [Genome] Rare SNPs Annotation in UCSC? >> >> Hi, >> >> I have no problem downloading human (hg19) snp annotation here: >> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp130.txt.gz >> >> Currently I am looking for the same annotation file for Rare SNPs. >> Is there a way to download them that in UCSC? >> >> >> - G.V. >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
