Hello, The file has to be in an ftp/http public location that the browser can find. Or, you can paste it in.
The idea is for the track documentation to be for the entire track, not individual items, but you can load whatever you want. http://genome.ucsc.edu/goldenPath/help/ct_description.txt http://genome.ucsc.edu/goldenPath/help/customTrack.html#ADD_CT (Step #3) Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "lohith madireddy" <[email protected]> wrote: > From: "lohith madireddy" <[email protected]> > To: [email protected] > Sent: Wednesday, December 16, 2009 6:50:10 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] Display pages with URL parameter in track line for custom > track - need help > > Dear UCSC list, > > I am trying to use my html webpage (sample text shown below) as the > url parameter in track line > > <A NAME="rs7591"></A> > <H2>rs7591</H2> > <P>This is a section that provides additional information about SNP > rs7591. > <BR> > <BR>Item: rs7591 > <BR>Chromosome: 17 > <BR>Begin in Chromosome: 60955543 > <BR>End in Chromosome: 60955543 > <BR>Genomic Size: 1 > <BR>Unadjusted P-value: 0.7352 > <HR> > > My text file for creating custom track is: > > browser position chr17:60955144-61067645 > track name="Custom_SNPs" description="SNPs on XXXXXX gene from GWAS > study" visibility=1 color=255,0,0 db=hg18 group="varRep" > url="file:///C:/Users/Lohith/Documents/Shared_Documents/doc.html#$$" > chr17 60955543 60955543 rs7591 > > I want to display the SNP and pvalue associated with it as a custom > track. I just have shown one SNP here. I am using a local file > C:/Users/Lohith/Documents/Shared_Documents/doc.html#$$ (also tried > file:///C:/Users/Lohith/Documents/Shared_Documents/doc.html#$$) to > display the p-value and other info. I am not using any external html > url. Will it not work with user made local html files? > > I get the following error using the above two files: Couldn't find > rs7...@chr17:60955543 in ../trash/ct/ct_genome_5a1f_9941e0.bed > > Please let me know what's wrong with the input files that the genome > browser cannot use my local html file when I click the snp in custom > track... I appreciate your advise. > > Thanks in advance > Lohith > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
