Hello, I was searching for the area on chr10 between 43224544-43224585 on the - strand. According to the browser I can clearly seen an exon and intro there, but there's no what I'm getting from the knowngene table. here is what I got with the same query:
>hg18_knownGene_uc001jav.2 range=chr10:43202091-43203338 5'pad=0 3'pad=0 >strand=- repeatMasking=none ATGATGCTGGGCCCTGAGGGAGGTGAAGGCTTTGTGGTCAAGCTCCGTGG CCTGCCCTGGTCCTGCTCTGTTGAGGACGTGCAGAACTTCCTCTCTGACT GCACGATTCATGATGGGGCCGCAGGTGTCCATTTCATCTACACTAGAGAG GGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGGATCAGAAGATGATGT AAAAATGGCCCTGAAAAAAGACAGGGAAAGCATGGGACACCGGTACATTG AGGTGTTCAAGTCCCACAGAACCGAGATGGATTGGGTGTTGAAGCACAGT GGTCCCAACAGTGCCGACAGCGCCAACGATGGCTTCGTGCGGCTTCGAGG ACTCCCATTTGGATGCACAAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT TGGAAATTGTGCCAAACGGGATCACATTGCCTGTGGACCCCGAAGGCAAG ATTACAGGGGAAGCGTTCGTGCAGTTTGCCTCGCAGGAGTTAGCTGAGAA GGCTCTAGGGAAACACAAGGAGAGGATAGGGCACAGGTACATTGAGGTGT TTAAGAGCAGCCAGGAGGAAGTTAGGTCATACTCAGATCCCCCTCTGAAG TTCATGTCCGTGCAGCGGCCAGGGCCCTATGACCGGCCCGGGACTGCCAG GAGGTACATTGGCATCGTGAAGCAGGCAGGCCTGGAAAGGATGAGGCCTG GTGCCTACAGCACAGGCTACGGGGGCTACGAGGAGTACAGTGGCCTCAGT GATGGCTACGGCTTCACCACCGACCTGTTCGGGAGAGACCTCAGCTACTG TCTCTCCGGAATGTATGACCACAGATACGGCGACAGTGAGTTCACAGTGC AGAGCACCACAGGCCACTGTGTCCACATGAGGGGCCTGCCGTACAAAGCG ACCGAGAACGACATTTACAACTTCTTCTCTCCTCTCAACCCTGTGAGAGT CCATATTGAGATTGGCCCAGATGGAAGAGTGACGGGTGAAGCAGATGTTG AGTTTGCTACTCATGAAGAAGCTGTGGCAGCTATGTCCAAAGACAGGGCC AATATGCAGCACAGATATATAGAACTCTTCTTGAATTCAACAACAGGGGC CAGCAATGGGGCGTATAGCAGCCAGGTGATGCAAGGCATGGGGGTGTCTG CTGCCCAGGCCACTTACAGTGGCCTGGAGAGCCAGTCAGTGAGTGGCTGT TACGGGGCCGGCTACAGTGGGCAGAACAGCATGGGTGGCTATGACTAG >hg18_knownGene_uc001jau.2 range=chr10:43202091-43203338 5'pad=0 3'pad=0 >strand=- repeatMasking=none ATGATGCTGGGCCCTGAGGGAGGTGAAGGCTTTGTGGTCAAGCTCCGTGG CCTGCCCTGGTCCTGCTCTGTTGAGGACGTGCAGAACTTCCTCTCTGACT GCACGATTCATGATGGGGCCGCAGGTGTCCATTTCATCTACACTAGAGAG GGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGGATCAGAAGATGATGT AAAAATGGCCCTGAAAAAAGACAGGGAAAGCATGGGACACCGGTACATTG AGGTGTTCAAGTCCCACAGAACCGAGATGGATTGGGTGTTGAAGCACAGT GGTCCCAACAGTGCCGACAGCGCCAACGATGGCTTCGTGCGGCTTCGAGG ACTCCCATTTGGATGCACAAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT TGGAAATTGTGCCAAACGGGATCACATTGCCTGTGGACCCCGAAGGCAAG ATTACAGGGGAAGCGTTCGTGCAGTTTGCCTCGCAGGAGTTAGCTGAGAA GGCTCTAGGGAAACACAAGGAGAGGATAGGGCACAGGTACATTGAGGTGT TTAAGAGCAGCCAGGAGGAAGTTAGGTCATACTCAGATCCCCCTCTGAAG TTCATGTCCGTGCAGCGGCCAGGGCCCTATGACCGGCCCGGGACTGCCAG GAGGTACATTGGCATCGTGAAGCAGGCAGGCCTGGAAAGGATGAGGCCTG GTGCCTACAGCACAGGCTACGGGGGCTACGAGGAGTACAGTGGCCTCAGT GATGGCTACGGCTTCACCACCGACCTGTTCGGGAGAGACCTCAGCTACTG TCTCTCCGGAATGTATGACCACAGATACGGCGACAGTGAGTTCACAGTGC AGAGCACCACAGGCCACTGTGTCCACATGAGGGGCCTGCCGTACAAAGCG ACCGAGAACGACATTTACAACTTCTTCTCTCCTCTCAACCCTGTGAGAGT CCATATTGAGATTGGCCCAGATGGAAGAGTGACGGGTGAAGCAGATGTTG AGTTTGCTACTCATGAAGAAGCTGTGGCAGCTATGTCCAAAGACAGGGCC AATATGCAGCACAGATATATAGAACTCTTCTTGAATTCAACAACAGGGGC CAGCAATGGGGCGTATAGCAGCCAGGTGATGCAAGGCATGGGGGTGTCTG CTGCCCAGGCCACTTACAGTGGCCTGGAGAGCCAGTCAGTGAGTGGCTGT TACGGGGCCGGCTACAGTGGGCAGAACAGCATGGGTGGCTATGACTAG Any idea what is the problem? Thanks, Idit -- Idit Kosti Computational Molecular Biology Lab, Faculty of Biology Technion - Israel Institute of Technology Haifa, Israel 972-4-8294258 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
