Duke wrote: > I am trying to compile from source, but it turns out for my Mac Pro that > I do not have mySQL in either /usr/include or /usr/local. Do we really > need mySQL in order to compile the source? I just need binaries relating > to bigBed/bigWig formats, not all the binaries, so is there any way of > doing that? > > Thanks,
Good Afternoon Duke: During the 'make libs' step the build will fail and stop in src/hg/lib/ Ignore that error, the libs you need are already done. Go to the src/utils/big* utility directories and run a make there. Most of the utilities will build from there. I find the following appear to build without SQL: bedClip bigWigInfo faRandomize htmlCheck twoBitToFa bedGraphToBigWig bigWigSummary faSize nibFrag wigToBigWig bedToBigBed bigWigToBedGraph faSomeRecords pslCDnaFilter bigBedInfo faCount faToNib stringify bigBedSummary faFrag faToTwoBit textHistogram bigBedToBed faOneRecord fetchChromSizes twoBitInfo --Hiram _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
