Hello, The recommendation is to download the kent source tree and compile for your own system. http://genome.ucsc.edu/FAQ/FAQdownloads#download27 http://hgdownload.cse.ucsc.edu/downloads.html -> Source downloads -> UCSC Genome Browser source download
The environment needs to be set up correctly from the top. To do this, see the general help here: http://genomewiki.cse.ucsc.edu/index.php/The_source_tree Specifically, follow the link to http://genome.ucsc.edu/admin/jk-install.html (The last step #8 is where you would compile utilities in the tree). A list of most common utilities and a brief description of each is here: http://genomewiki.cse.ucsc.edu/index.php/Kent_source_utilities For complete usage, type in the utility name at the prompt (once compiled). README files throughout the download provide local help specific to that portion of the source tree. Hopefully this will help solve the problem with these two utilities, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "giorgio giurato" <[email protected]> wrote: > From: "giorgio giurato" <[email protected]> > To: [email protected] > Sent: Friday, January 15, 2010 12:40:13 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] information about bedToBigbed for linux i386 > > Hi, > i'm Giorgio Giurato, a PhD student at Second University of Naples. > Yesterday i received the mail where you suggest to convert our bed > file in other formats, like Bigbed. > Searching between the directory i have note that the program > bedtoBigbed is not avaible for linux i386. Can i use the one that is > in the directory linux_x86_64? I think no. > another dubt is about the script fetchChromSizes. how must i use it? > Is not clear for me. > Thank you! > i wait for your answer. > Best Regards, > Giorgio Giurato > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
