I am trying to use the UCSC table browser to identify SNPs located within specific regions of interest in individual "CEU daught '2878 (pgNA12878)" using the Genome Variants track (Human assembly March 2006).
The problem I have encountered is that I have more than 1,000 regions of interest. I therefore cannot upload a list of co-ordinates into the region definition area of the table browser. I have generated a custom track using the co-ordinates that relate to my regions of interest and then attempted to create an 'intersection' between the custom track and the "CEU daught '2878 (pgNA12878)" Genome Variants track. However, once the intersection is created the output option 'all fields from selected table' disappears. I need this option in order to obtain the information pertaining to the SNPs (i.e. allele name, allele count, etc.) that lie within the regions of interest. Any help as to how I can go about obtaining this information would be greatly appreciated. Regards, Christopher Watson _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
