Hello Elodie, You are correct - the track TFBS Conserved is contained in the hg18 database, but not the hg19 database. So, no tables have been deleted anywhere. Just double check that the correct database (hg18) is selected in the Table browser, or Assembly gateway page, or Downloads area when viewing/retrieving the data.
The table tfbsConsSites Data between the two would not be the same even if they both had the track, since the reference genomic sequence that the mapped position are based on would be different. The table tfbsConsFactors Data would also probably not be the same, since looking at the latest release notes at Biobase, it appears the last update was in Fall 2009 (the hg18 track was created in 07/2007). You could download the data there and compare to see how much change there has been for Human. http://www.biobase-international.com/pages/index.php?id=117 We hope this helps, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Elodie Drula" <[email protected]> wrote: > From: "Elodie Drula" <[email protected]> > To: [email protected] > Sent: Thursday, January 21, 2010 1:44:48 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Locating of TFBS conserved information > > Hello, > I would like to get informations which were located in the tables > tfbsConsSites and tfbsConsFactors in the previous version (i.e Hg18). > Your database schema has been updated so it seems that this two > tables > have been deleted. > But I read here that this tables are still available : > https://lists.soe.ucsc.edu/pipermail/genome/2009-September/020070.html > May be this tables in the version Hg18 are the same in the version > Hg19 ? > > Thanks a lot in advance, > Elodie > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
