Hello Benjamin, We do not have a track for CpG Islands based on this algorithm, however the authors have made available a tool to do the analysis. We were able to find the web version, but perhaps by looking around a bit more or contacting the authors the perl version could be found by you.
Once you have results, it could be formatted and loaded as a custom track: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks http://genome.ucsc.edu/FAQ/FAQformat http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format Some helpful links to get started: http://www.bioinfo.de/isb/2003030021/main.html http://www.uscnorris.com/cpgislands2/cpg.aspx We hope this is helpful for you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Benjamin G Barwick" <[email protected]> wrote: > From: "Benjamin G Barwick" <[email protected]> > To: [email protected] > Sent: Monday, January 25, 2010 11:12:22 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] CpG islands > > Dear UCSC Genome staff, > > I was wondering if you have a data download of CpG islands according > to the Takai Jones criteria. > > Thank you, > -Ben > > Benjamin G. Barwick > Bioinformatic Analyst > Warren Lab - Human Genetics - School of Medicine - Emory University > Emory Biomarker Service Center - Winship Cancer Institute - Emory > University > > 1365 B Clifton Rd NE > Clinic B, Suite B4333 > Atlanta, GA 30322 > (404) 778-1993 > > > ________________________________ > This e-mail message (including any attachments) is for the sole use > of > the intended recipient(s) and may contain confidential and privileged > information. If the reader of this message is not the intended > recipient, you are hereby notified that any dissemination, > distribution > or copying of this message (including any attachments) is strictly > prohibited. > > If you have received this message in error, please contact > the sender by reply e-mail message and destroy all copies of the > original message (including attachments). > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
