Hello,
I am trying to create a browser for new species in my local copy of the
genome browser. I have created and succesfully loaded maf alignment tracks,
and the displayed results look as expected.
However, when I click on the maf track to display the actual alignment, the
hgc starts allocating large amounts of memory (>3 GB) and does not return
expected results (probably gets killed for using too many resources). Note
that these are really small genomes I am working with (sequences of less
than 30Kbp) and the maf alignment has about 1MB. Do you know any reason why
this should be happening?
Here is the definition of the track from trackDb.ra:
track mafCandida
shortLabel Multiz Align
longLabel Multiz Alignments
summary mafCandidaSummary
spanList 1
maxHeightPixels 100:40:11
autoScale Off
windowingFunction mean
group compGeno
color 0, 10, 100
altColor 0,90,10
type wigMaf 0.0 1.0
priority 100
visibility pack
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Tomas Vinar, Assistant Professor
Department of Applied Informatics
Faculty of Mathematics, Physics, and Informatics
Comenius University, Bratislava
E-mail: [email protected]
Office: M163
Work Phone: +421-2-60295207
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
