Hello Pete, Two places to start are in the Gene Sorter tool and by examining data in the track group "Expression".
Creating a custom track of your genes of interest (to have the genome locations loaded) would helpful for the latter since that annotation also anchored to the reference genome. Perhaps two custom track - one for just the CDS, one for the entire transcript. This would help with intersection/correlation function in the Table browser. For a full intersection (batch), sending the two datasets to Galaxy would allow you to create output based on interval overlap that contains the complete contents of both comparision datasets. You may know these tool locations & FAQ information already, but here are the links for reference: http://genome.ucsc.edu/cgi-bin/hgNear http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Hopefully this helps to get you started. The methods for tracks can be found by clicking on the track name from inside the assembly's browser. Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Pete Shepard" <[email protected]> wrote: > From: "Pete Shepard" <[email protected]> > To: [email protected] > Sent: Thursday, February 4, 2010 11:16:42 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] (no subject) > > Dear Genome Browser, > > I would like to obtain tissue/ cell line specific protein > concentrations > and/ or mRNA concentrations for a set of genes. I am wondering if I > can > obtain this data through the Browser. > > Thanks > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
