Hello, The data that is viewed in the browser for mm9 chrX:26708041-26820393 is based on the MAF alignment. There are no phastCons (Most Conserved) data for this region.
The data that is viewed in the browser for mm9 chrX:3853979-3854090 is based on both the MAF and phastCons and can be extracted from the Table browser. Data in the browser is in wiggle format - variable step. There is no base-by-base data. Use the files on downloads instead for per-base data. http://genome.ucsc.edu/FAQ/FAQformat.html#format6 Thanks Jen --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/8/10 9:20 AM, Noboru Jo Sakabe wrote: > Hi, I believe there is a problem with file > phastConsElements30way.txt in mm9. > All chrX "most conserved" elements that I pick do not seem to have a > corresponding base-by-base score available in the genome browser and > sometimes span large genomic intervals. > Examples: > chrX 26708041 26820393 > chrX 32609300 32721630 > chrX 3238186 3238364 > > File phastConsElements30wayPlacental.txt seems to be correct. > chrX 3853979 3854090 > chrX 3856613 3856899 > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
