Oh ! The change in the build name from hg19 to GRCh37 is probably the problem, I will run the fetchChromSizes script to get the new chrom sizes then run the bedToBigBed command again ...
> Hi, > > I have been trying to load my bigbed custom tracks file since > yesterday, and I get the following error when clicking on "go to > genome browser". > * > Error(s):* > > * Can't start query: > select fileName from ct_MyBigBed_928 > * mySQL error 1146: Table 'hg19.ct_MyBigBed_928' doesn't exist > > > I didn't make any change to that file and was using it few weeks ago > with no issue. I tried re-creating it with bedToBigBed, with no luck. > The file is located at : > http://www.genomequebec.mcgill.ca/compgen/submit_db/bed/temp.bb > > Is the problem on your side ? > Thanks > > Jessica > > >-- >Jessica Wasserscheid >Bioinformatician, Vervet Monkey Genomics Project >http://www.genomequebec.mcgill.ca/compgen/submit_db/vervet_project >McGill University & Genome Quebec Innovation Center >740 Dr. Penfield Avenue Room 7211 >Montreal, Quebec Canada, H3A 1A4 > >Email : [email protected] >Phone : (001) 514-398-3311 #00476 > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
