Hello Becky, This is correct - "Genbank Format" is not an output option. However, you can export sequences and features using the table browser in other standardized formats (fasta, GTF, etc.). You will need to output the data per-track and then merge it into the final genbank format, which will probably require some data manipulation on your part.
Here is an FAQ explaining the data types UCSC uses and the Table browser in general. Please note that not all output options are available for all tracks for all functions. http://genome.ucsc.edu/FAQ/FAQformat.html http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser Some suggested places to look for tools that may with the data merge would be the NCBI tool kit and Bioperl. Hopefully this helps, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/12/10 12:06 PM, Rebecca Bosko wrote: > Hi, > I'm in the process of trying to design MLPA probes and the program we have > will import DNA sequence with variations correctly marked if they are in the > Genbank format. But I don't see a way to export a specific region of > sequence from your genome browser with the genbank format. Is it possible > to do such or is this a feature that is not yet available? > Thanks, > Becky Bosko > University of Pittsburgh > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
