Hello, The database mySQL tables contain compressed data for display. Datafiles for analysis are also available on the Downloads server, under the assembly. Instead of going into the directory: Annotation Database, go into the directory: Multiple Alignments -> Basewise conservation scores (phyloP) of 43 vertebrate genomes with Human
Direct link for hg18: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/ Please let us know if you have any questions about the data, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/23/10 11:51 PM, Maria elena Sana wrote: > Dear users, > I have a question about the search for a evolutionary conservation > score for each nt. > I'm using the table browser (with mysql files) for mammal conservation > by phyloP, but the program (using file wib and wig found in > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/) > gives me different values, like bin, range, lowerLimit, datarange, > offset and so on. > I really want only a score (the so call "mean value") that indicates > the conservation for that nucleotide on a given sequence. > Could you please help me? > Thank you very much. > MES > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
