Hi Sunduz, This track has not yet been created for mm9 and we do not have an estimate for when it would be released to the browser. So for now, yes, the best way to get the data mapped to mm9 is to use liftOver.
From your comments, it seems that you probably already know how to use liftOver. If not, this prior answer from today has information about the utility. https://lists.soe.ucsc.edu/pipermail/genome/2010-March/021446.html The mm8ToMm9.over.chain.gz file is located here for ftp: http://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/ Please let us know if you need additional assistance, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/28/10 7:36 PM, Sunduz Keles wrote: > > > Hi, > > I realized that genomic super duplications are not provided for mm9. > (genomicSuperDups.txt.gz does not exist in > http://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/ whereas it exists > in mm5, mm6 etc) > > Is this located at somewhere else in the download area? Or is lifting over > the only to get this? > > > thanks! > Sunduz > > > ------------------------------------------------------------------------------------ > Sunduz Keles > http://www.stat.wisc.edu/~keles > Associate Professor > Department of Statistics tel: 608-263-4533 (1245B > MSC) > Department of Biostatistics and Medical Informatics > University of Wisconsin-Madison > ----------------------------------------------------------------------------------- > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
