Hello, Use the Table browser or also download these associated tables.
knownToEnsembl kgProtAlias To see all linked tables (and which keys they are linked on), open the UCSC Genes track in the Table browser and click into "describe table schema". Linked files can be merged and downloaded here with output format "selected fields from primary and related tables". For these tables, this is the specific path to link the data: knownGene.name -> knownToEnsembl.name knownToEnsembl.value = Ensembl Id knownGene.name -> kgProtAlias.kgID kgProtAlias.alias = protein aliases from several sources, including HUGO http://genome.ucsc.edu/cgi-bin/hgTables Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 3/2/10 7:27 AM, Tsviya Olender wrote: > Hi > > I download UCSC known genes table. > How can I convert UCSC identifiers to Ensembl or HUGO (when exists). > > I tried the BioMart tool of Ensembl, but it does not contain all UCSC > identifiers. > > > Thanks > > Tsviya > > Tsviya Olender, Ph. D. > The Crown Human Genome Center > Dept. of Molecular Genetics > The Weizmann Inst of Science > Rehovot 76100, Israel > Office: 972-8-9342572 > e-mail: [email protected] > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
