Hello, By "no expression data" from the .gff file, do you mean no line graph? This would be expected. Data in a .gff file is positional. Presumably the other labels in the file would provide information about what the positions represent (for example: score) FAQ for GFF format: http://genome.ucsc.edu/FAQ/FAQformat.html#format3
To control the display of scores, follow the custom track "track line" construction instructions (specifically, try "useScore=1") http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TRACK The .wig file you obtained is one of the graphing data formats the browser displays. Others are discussed here: http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format Please let us know if this does not resolve your display issue, Jen --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 3/12/10 3:46 AM, Alexandra Lopes wrote: > > > Hello > > > > I have been using the custom tracks to visualize in the browser ChIP-seq data > from a published study by uploading the .wig files from GEO. However when I > try to see the expression data that are in . gff format I only get a User > track with a kind of a position map but no expression data (screenshot and > data file in attachment). Any idea on what is happening? > > > > Thanks, > > > > Alexandra > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
