Dear Genome list, I want to ask a question about creat a multiple alignment from pair-wise alignments from UCSC Genome Blowser. The whole genome multiple alignment I need is from 12 Drosophila species, but the multiple alignment data on UCSC Genome Blowser contain 3 excess species (A. gambiae, A. mellifera and T. castaneum).
I know there is a complex method to use multiz/TBA to get multiple alignment from pair-wise alignments. However, these pair-wise alignments must in MAF format. But it seems difficult to get the format convert tool on Kent source. Do you know other method to remove the 3 excess species from the multiple alignment from UCSC Genome Blowser? Thank you very much in advance! Best regards! Shan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
