I was trying to figure out a way to predict an amino acid call for all the transcripts for a given position in the genome.
for e.g. if i have a file with records like: chr1 103260930 + A where + is the strand A is the allele seen at that loci. I would like to find out all the transcripts covering this position and the amino acid this loci belongs to. I understand that this is what UCSC genome browser is doing essentially, but i wanted to run a file with 1000 records and therefore it won't be feasable to manually enter the data in UCSC. Is there a set of files someone can point me to so that i can compute this? Or if there any other suggestions from the group? Thanks, Nipun _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
