Hello Alden, Data can be accessed using the Table browser or the Downloads server
Downloads location: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ http://genome.ucsc.edu/FAQ/FAQdownloads.html#download1 Use the Table browser to find out the exact table/file name(s). http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Set clade=mammal, genome=Human, assembly=Mar.2006 (NCBI36/hg18), then: group = Gene and Gene Predictions track = RefSeq Genes table = pull down menu to find refSeqAli (PSL format) group = mRNA and EST Tracks track = any included table = default table for this group is in PSL format Use the "define table schema" to view field descriptions and related tables. Output the entire table, filter by region and output, or (better for larger complete datasets) ftp/rsync the file from hgdownload. PSL format Help: http://genome.ucsc.edu/FAQ/FAQformat.html#format2 Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 3/24/10 4:08 PM, Alden Huang wrote: > Hi, > >> From a prior post, I noticed that it was mentioned that RefSeq and > GenBank cDNA transcripts > are aligned to the genome nightly. > > Could I kindly be directed to where I might be able to access the PSL > format for these (on hg18) ? > > Thanks, > > Alden > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
