Dear Genome Assemblers, I didn't find the first chromosome sequence in drosophila (dm3) chromFaMasked.tar.gz file as shown below. In addition, what do 'LHet' and '2L' mean in files of chr2LHet.fa.masked and chr2L.fa.masked ? Another question, the RefGene file of rat (rn4) misses the first column as compared to hu19.refGene, would you explain you have changed the format or it's due to something else? You reply will be greatly appreciated !
tar xvf chromFaMasked.tar.gz -rw-rw-r-- 1 wangd3 bioinfo7 23471782 Jun 21 2007 chr2L.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 376260 Jun 21 2007 chr2LHet.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 21569650 Jun 21 2007 chr2R.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 3354547 Jun 21 2007 chr2RHet.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 25034436 Jun 21 2007 chr3L.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 2606611 Jun 21 2007 chr3LHet.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 28463162 Jun 21 2007 chr3R.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 2567868 Jun 21 2007 chr3RHet.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 1378901 Jun 21 2007 chr4.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 19914 Jun 21 2007 chrM.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 29584761 Jun 21 2007 chrUextra.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 10250024 Jun 21 2007 chrU.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 22871290 Jun 21 2007 chrX.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 208204 Jun 21 2007 chrXHet.fa.masked -rw-rw-r-- 1 wangd3 bioinfo7 353988 Jun 21 2007 chrYHet.fa.masked Thanks, Daqing (Derek) Wang, PhD Staff Scientist - Bioinformatics Life Technologies, Inc. (Applied Biosystems) Building 800 Foster City, CA 94404 Office: (650) 638-5102 E-mail: [email protected] http://www.lifetechnologies.com/ -----------------------------
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