Good Afternoon Guillermo:

You may find some useful links in this article:

http://www.biomedcentral.com/1471-2105/7/103/abstract/

> SinicView: A visualization environment for comparisons
> of multiple nucleotide sequence alignment tools
> 
> Arthur Chun-Chieh Shih, DT Lee, Laurent Lin, Chin-Lin Peng,
> Shiang-Heng Chen, Yu-Wei Wu, Chun-Yi Wong, Meng-Yuan Chou,
> Tze-Chang Shiao and Mu-Fen Hsieh


--Hiram

[email protected] wrote:
> Hello, 
> 
> I was wondering if anyone determined a method to compare two alignment 
> methods? 
> 
> I created a pipeline similar to the UCSC pipeline and i wanted to compare my 
> results with that of another researcher's lab created alignment. I am unsure 
> how exactly they created their files, but they are also in multiple alignment 
> format. 
> 
> Thank you for any assistance or advice.
> 
> Guillermo Monroy
> Undergraduate Researcher
> Univ. of Il @ Urbana Champaign
> 
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