Hi there, Could you please advice me the best way to obtain (mm9) RefSeq canonical transcripts genomic intervals? I see that there is a table for UCSC genes "knownCanonical", but I was wondering if there was something similar just for RefSeq? I could just filter for UCSC genes with linked RefSeq ID's but was wondering if there was a better way?
Also is it possible to get a non-redundant set of RefSeq exons while still retaining the Gene Name information? I have tried to merge the exon genomic intervals within Galaxy, but it doesn't return the gene names. Bascially, my goal is to get a RefSeq-based locus information either through non-redundant exons or non-redundant whole gene co-ordinates. Thanking you in advance. Cheers, Rathi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
