It will work OK Jay. That is merely an older name for that column. It will function as RGB if you turn on that option in your trackDb_local.
--Hiram ----- Original Message ----- From: "Jaysheel Bhavsar" <[email protected]> To: [email protected] Sent: Thursday, April 8, 2010 2:35:00 PM GMT -08:00 Tijuana / Baja California Subject: [Genome] create bed file with itemRGB Hi guys, I want to create a track such that if there is any methylation in CpG motif they are colored differently from non methylated regions. Using Example 5 here http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TRACK I though if I format my bed file properly ie. chr_1 start stop score name strand start stop rgb I would achieve the result, but that is not the case. After creating a bed file, I used hgLoadBed to load it into db. The table created has following fields bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved I was expecting the last field to be itemRGB, and not reserved. It seems that I am missing something here, did I not create the bed file correctly? Thank you Jay _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
