Hello, It is beyond the scope of the mailing list to perform research on individual data features, but we can help you to gain access to information and tools that you can use to perform your own analysis.
Using the UCSC Browser, a search in hg19 or hg18 using the keyword "rs71803444" will take you to an Assembly browser with the SNP highlighted. hg18 = Human Mar. 2006 (NCBI36/hg18) assembly hg19 = Human Feb. 2009 (GRCh37/hg19) assembly In the Assembly browser window, you can open up other tracks to view their relationship with the position of the SNP. Click on the SNP name to see summarized annotation. Follow the link out to dbSNP to find: http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs71803444 Another analysis path to try is to send the UCSC dbSNP entry to Galaxy and perform an intersection with the SNP datasets they include. To do this, use the Table Browser to extract the SNP record (using the rs identifier, the hg18 database, and the db130 dbSNP track). Choose output = BED and check the "Galaxy" box. http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Once in Galaxy, your record will appear in the history. Click on the top link into the Data Libraries, select the dataset(s) of interest, load these into your history, and use a function such as Operate on Genomic Intervals -> Intersect. If any of the datasets share a position with your SNP, then you might be able to find out more about possible known/experiential function. Good luck with your research, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/21/10 3:18 AM, Svetlana Adamovic wrote: > I need some more information about this SNP (rs71803444), as there is nothing > published about it. Can you plese help me to understand what function this > SNP has? > > Best regards, > > Svetlana > ________________________________ > > Svetlana Adamovic, Ph.D. > Institute of Neuroscience and Physiology > Medicinaregatan 11 > Gothenburg > Sweden > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
